April 12, 2019
RIKEN Plant Metabolonome MetaDatabase External Link
RIKEN Plant Metabolome MetaDatabase (PMM) is an integrated plant metabolome data repository based on the semantic web.
February 11, 2017
Computational metabolomics
The room of Dr. Hiroshi Tsugawa, PhD. MS-DIAL, MS-FINDER, MRMPROBS, MRM-DIFF, SmetSearch, Curated EI-MS and MS/MS databases, AIoutput, and Excel Macro applications.
June 27, 2018
PlaSMA External Link
Plant Specialized Metabolome Annotation.
January 16, 2017
DROP Met
Contains various datasets obtained from mass spectrometer-based metabolome analyses.
April 28, 2014
MeKO
Metabolomic characterization of 50 Arabidopsis mutants and the database as a functional genomics tool.
January 24, 2014
MetBoard External Link
MetBoard provides information of standard compounds which can be divided from providers for collaboration work.
November 11, 2013
ReSpect for Phytochemicals External Link
A collection of literature and in-house MSn spectra data for the plant metabolomics research.
Mar 31, 2017
HIFI External Link
Heteroatom-containing Ion Finder (HIFI) is a tool for Liquid chromatography Fourier transfer ion cyclotron resonance-mass spectrometry.
October 31, 2012
PRIMeLink External Link
Innovative integration of the databases in PRIMe and bi-directionalsearchable function from the gene or metabolite perspective.
August 10, 2011
AtMetExpress
AtMetExpress LC-MS ia a phytochemical atlas of Arabidopsis thaliana. Now, following two datasets are available.
January 20, 2010
LC-MS Branch
Liquid chromatography-mass spectrometry (LC-MS) branch of the Platform for RIKEN Metabolomics (PRIMe) pipeline is now ready for the analysis of plant secondary metabolites.
July 4, 2009
MS/MS spectral tag (MS2T) viewer
MS/MS spectral libraries of plant secondary metabolites created for LC-MS metabolomics.
November 15, 2007
KNApSAcK
A comprehensive species-metabolite relationships database.
August 30,2006
Standard Spectrum Search
A database of the standardized spectra of a range of compounds based on NMR chemical shifts and on GC and LC mass spectrometer.
December 30,2005
Simple BL-SOM
An application for creating a batch-learning self-organizing map.
Related Papers
Sakurai et al. (2013) PRIMe Update: Innovative Content for Plant Metabolomics and Integration of Gene Expression and Metabolite Accumulation.Plant Cell Physiol. 54:e5 [PubMed] External Link
Akiyama et al. (2008) PRIMe: a Web site that assembles tools for metabolomics and transcriptomics. In Silico Biol. 8, 0027. </isb/2008/08/0027/> [PubMed] External Link
2019-04-15
[DROP Met] Data was added.
2019-04-12
[RIKEN Plant Metabolonome MetaDatabase] Newly opened.
2019-04-01
[PASMet] PASMet has closed due to end of support.
2018-06-27
[PlaSMA] Newly opened.
2017-01-16
[DROP Met] Data was added.
2017-01-06
[DROP Met] Data was added.
2015-06-02
[PASMet] Newly opened.
2014-10-08
The directory [Targeted and Non-targeted analysis software] was moved to newly opened [Standalone software] section.
2014-06-19
[DROP Met] Data was added.
2014-01-24
[MetBoard] Newly opened.
2013-09-26
[DROP Met] Data was added.
2013-07-01
[DROP Met] Data was added.
2013-04-25
[DROP Met] Data was added.
2013-04-01
[Targeted and Non-targeted analysis software] Newly opened.
2013-02-15
[DROP Met] Data was added.
2013-02-13
[DROP Met] Data was added.
2012-10-31
[PRIMeLink] Newly opened.
2012-09-14
[SpinAssign] Added more than 510 NMR spectra for Methanol/HEPES extracted samples.
2012-08-10
[MeKO] Newly opened.
2011-08-10
[AtMetExpress] New content available.
2010-09-10
[ReSpect] Newly opened.
2009-04-07
[MS2T] Newly opened.
2008-06-26
[Standard spectrum search] Dramatically changed standard data, ex. 300% increase of NMR data, and version up of "current status" metabolic map.
[SpinAssign] Modified example input data to experimental plant extract, measured by our laboratory. Searching total of more than 500 of 13C-HSQC cross peaks with our new NMR data base.
2006-12-29
[SpinAssign] Released a stable service.
[Standard Spectrum Search] Released a stable service.
[Cluster Cutting] Changed the service name.
[Correlated Gene Search] Changed the service name.
2006-08-30
[Site Map] Added a page.
[Cluster Extract] Updated "Using Cluster Extract"
[Cluster Extract] Revised the cutting program.
[Coexpression Gene Search] Released a stable service.
[Coexpression Gene Search] Updated "Using Coexpression Gene Search"
2006-08-17
[Coexpression Gene Search] Added a Biolayout-compatible output format and revised the Pajek-compatible output format.
 
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