MeKO Analysis Results

Information:
Allele Symbol pac-1S
AGI Code AT2G48120
Gene Name PALE CRESS
Description The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.
Size/Weight nomal
Color nomal
Shape nomal

 

Analysis results:
Normalization CRMN
Differential Accumulation limma
MS Type GC-TOF-MS
Visual phenotype
Metabolite profile
Red: significantly increase, Blue: significantly decrease (log2FC >= |1| and FDR < 0.05)
Replicate quality check
Volcano plot

blue-colored name: top 30 metabolites to be highlited.
Top 30 metabolites
ID logFC t P.Value adj.P.Val B
phytol -2.04457459344694 -3.38762436828651 0.00076662220525315 0.184755951466009 -1.01250315711339
U -0.492291230450576 -2.82283504706038 0.00491813244280569 0.550213708399915 -2.26064344491067
l-glutamine -0.772519542559273 -2.71356120802848 0.00684913329958401 0.550213708399915 -2.49410842083083
U -1.05292317975886 -2.49610166079285 0.0128638494368325 0.77504692856916 -2.95528127185831
lactic acid -0.52245634281163 -2.41025109788563 0.0162416664232024 0.782848321598354 -3.09475116424571
l-lysine -0.661727818985877 -2.28298666036098 0.0227786716907893 0.914943312913369 -3.3260827812118
U -0.478121367932342 -1.91335751944415 0.0561736910251544 0.9950473660448 -3.92834480503695
U 0.860256509444465 1.82824647155894 0.068049799062703 0.9950473660448 -4.0521896103851
U 1.1560695100496 1.75612571660883 0.0796083777414051 0.9950473660448 -4.13818864095316
glycine 0.882989052137756 1.7155194896936 0.0868180182858472 0.9950473660448 -4.17735007633511
U 0.742559204323157 1.68758070312233 0.0920346631418858 0.9950473660448 -4.21199003259407
U -0.621979163433572 -1.70614134764927 0.0885006799714537 0.9950473660448 -4.2201630933859
linoleic acid -0.376240809712005 -1.55631705603212 0.120155341215973 0.9950473660448 -4.41073755584226
U 1.14608070799279 1.40625485010792 0.160373463885458 0.9950473660448 -4.47549103168514
sucrose -0.285650003325539 -1.48905337273104 0.136999297737736 0.9950473660448 -4.49051135679979
U 0.665945826542851 1.48306694377737 0.138605120234531 0.9950473660448 -4.49723221942222
U -0.85444982681153 -1.3866525243619 0.166200432011985 0.9950473660448 -4.60386555840257
U -0.311585553036586 -1.27481297692067 0.202862921742755 0.9950473660448 -4.72171229581406
U -0.409440695674487 -1.26876498578495 0.205012545171725 0.9950473660448 -4.72771971416116
U 0.965460234045707 1.01040076723356 0.312985056812696 0.9950473660448 -4.73036507533279
palmitic acid -0.433098029791715 -1.22062279396653 0.222731500040968 0.9950473660448 -4.77403262434667
U -0.552904330712945 -1.17737006494978 0.239584002781399 0.9950473660448 -4.77983344854111
U -0.46756465568534 -1.14440216712099 0.252948995835048 0.9950473660448 -4.84428053548144
U -0.576698565898178 -1.09560669220635 0.273771759898884 0.9950473660448 -4.84972102991295
U 0.685762785707997 1.08711534067589 0.277465201036377 0.9950473660448 -4.89409402396003
U -0.386055325526058 -1.08418722686516 0.278724364831232 0.9950473660448 -4.89726254263298
U 0.69534466461462 0.88790095750865 0.375133879208431 0.9950473660448 -4.9109290421445
U 0.657246030489988 1.0608788118769 0.289190100498831 0.9950473660448 -4.91659411091913
U -0.521562532848538 -1.01081414234894 0.312552016137178 0.9950473660448 -4.91813114700564
U 0.432252887526177 1.00966341730798 0.313084712814936 0.9950473660448 -4.91967291899137

U: unknown peaks
Limma result myTopTable_ALL_pac1S.tbl.gz